Background
DESCRIPTION¶
This is a living document for the HPC component of the MVP on AWS. This is a code repository and a living document describing ideas, "how-tos", slides etc. related to the Minimal Viable Product (MVP) to be built for the Genetics Branch (GB) on Cloud One or AWS.
Disclaimer: There are two parallel efforts underway for the "cloudification" of GB, namely, a. Moving the database management and its web-interface to AWS also referred to as "the Database component" and b. Orchestrating NGS analysis workflows on AWS which is also referred to as "the HPC compotent". This repository solely focuses on the HPC component.
As MVP, we propose creating a basic RNAseq workflow on AWS using AWS CLI. We would like to use both the following pipelining frameworks:
The code repository will hold the following:
- Snakemake pipeline
- Nextflow pipeline
- Recipes for Docker containers used by the pipeline and
- This documentation
Please send your comments/questions/suggestions to Vishal Koparde.